Corvus is a set of free wargames rules for fighting ancient sea battles.
Trireme, from Andy Watkins, is a set of free naval wargames rules. These are of the one-page variety, which means that there is much to recommend them. I also like the staggered movement system based on boat speed, which reminds me of the old Car Wars system.
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Ramming Speed is a set of free wargames rules for righting naval battles with ancient galleys. The rules are designed for 15mm models.
Fleet of Battle is a set of free wargames rules for playing out battles between fleets of ancient galleys. Think Ben Hur. There also are several pages of free print-and-play galleys for use in lieu of lead miniatures. The rules require a knowledge of the commercial Field of Battle wargames rules.